297f415cbd369921895e0adb7143202e5cc489f4 bwick Fri May 23 09:16:54 2025 -0700 Changed cellbrowser.conf template to remove 'body_parts' tag. diff --git src/cbPyLib/cellbrowser/cellbrowser.py src/cbPyLib/cellbrowser/cellbrowser.py index b488cc5..80ef60a 100755 --- src/cbPyLib/cellbrowser/cellbrowser.py +++ src/cbPyLib/cellbrowser/cellbrowser.py @@ -4787,31 +4787,30 @@ # This is a bare-bones, auto-generated Cell Browser config file. # Look at https://github.com/maximilianh/cellBrowser/blob/master/src/cbPyLib/cellbrowser/sampleConfig/cellbrowser.conf # for a list of possible options # You can also write a default template into the current directory with cbBuild --init name='%(name)s' shortLabel='%(name)s' exprMatrix='%(matrixFname)s' #tags = ["10x", 'smartseq2'] meta='%(metaFname)s' geneIdType='auto' defColorField='%(clusterField)s' labelField='%(clusterField)s' enumFields=['%(clusterField)s'] coords=%(coordStr)s #alpha=0.3 -#body_parts=["embryo", "heart", "brain"] #radius=2 """ % locals() if addMarkers: conf += 'markers = [{"file": "markers.tsv", "shortLabel":"Cluster Markers"}]\n' if "quickGenesFile" in args: conf += 'quickGenesFile="%s"\n' % args["quickGenesFile"] else: conf += "#quickGenesFile='quickGenes.tsv'\n" if "geneToSym" in args: conf += "geneToSym='%s'\n" % args["geneToSym"] if "spatial" in args: