906e4de349d22e0200d2baad80966ad2489da5d9 max Fri May 23 08:55:10 2025 -0700 small fix for prev commit diff --git src/cbPyLib/cellbrowser/convert.py src/cbPyLib/cellbrowser/convert.py index 1f0f13d..d8c1a8c 100644 --- src/cbPyLib/cellbrowser/convert.py +++ src/cbPyLib/cellbrowser/convert.py @@ -54,31 +54,31 @@ (options, args) = parser.parse_args() if showHelp: parser.print_help() exit(1) setDebug(options.debug) return args, options def cbToolCli(): " run various tools from the command line " args, options = cbToolCli_parseArgs() - if len(args)<=1 and args[0] != "quickgenes": + if len(args)<=1 and (len(args)!=0) and args[0]!="quickgenes"): cbToolCli_parseArgs(showHelp=True) sys.exit(1) cmd = args[0] cmds = ["mtx2tsv", "matCatCells", "matCatGenes" "metaCat", "reorder", "cxg", "quickgenes"] if cmd=="mtx2tsv": mtxFname = args[1] geneFname = args[2] barcodeFname = args[3] outFname = args[4] mtxToTsvGz(mtxFname, geneFname, barcodeFname, outFname) elif cmd=="matCatCells": inFnames = args[1:-1]