18dd6ea0ae6c64a5ded831b520e046eabe389cbf
max
  Wed Oct 8 06:13:10 2025 -0700
next try

diff --git docs/conf.py docs/conf.py
index 464063d..09d7cc4 100644
--- docs/conf.py
+++ docs/conf.py
@@ -1,194 +1,195 @@
 # -*- coding: utf-8 -*-
 #
 # Configuration file for the Sphinx documentation builder.
 #
 # This file does only contain a selection of the most common options. For a
 # full list see the documentation:
 # http://www.sphinx-doc.org/en/master/config
 
 # -- Path setup --------------------------------------------------------------
 
 # If extensions (or modules to document with autodoc) are in another directory,
 # add these directories to sys.path here. If the directory is relative to the
 # documentation root, use os.path.abspath to make it absolute, like shown here.
 #
 # import os
 # import sys
 # sys.path.insert(0, os.path.abspath('.'))
 
 
 # -- Project information -----------------------------------------------------
 import sys, os
 print(os.getcwd())
 os.system("ls")
 sys.path.insert(0, "src/cbPyLib")
 sys.path.insert(0, "../src/cbPyLib")
 import cellbrowser
 
 project = 'cellbrowser'
 copyright = '2018, Maximilian Haeussler'
 author = 'Maximilian Haeussler, Lucas Seninge, Nikolai Markov'
 
 # The short X.Y version
 #version = ''
 # The full version, including alpha/beta/rc tags
 #release = ''
 version = cellbrowser.__version__.replace('.dirty', '')
 release = version
 exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']
 pygments_style = 'sphinx'
 
 
 # -- General configuration ---------------------------------------------------
 
 # If your documentation needs a minimal Sphinx version, state it here.
 #
 # needs_sphinx = '1.0'
 
 # Add any Sphinx extension module names here, as strings. They can be
 # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
 # ones.
 extensions = [
-    'sphinx.ext.viewcode',
+    'sphinx_rtd_theme',
+    'sphinx.ext.viewcode'
 ]
 
 # Add any paths that contain templates here, relative to this directory.
 templates_path = ['_templates']
 
 # The suffix(es) of source filenames.
 # You can specify multiple suffix as a list of string:
 #
 # source_suffix = ['.rst', '.md']
 source_suffix = '.rst'
 
 # The master toctree document.
 master_doc = 'index'
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.
 #
 # This is also used if you do content translation via gettext catalogs.
 # Usually you set "language" from the command line for these cases.
 language = None
 
 # List of patterns, relative to source directory, that match files and
 # directories to ignore when looking for source files.
 # This pattern also affects html_static_path and html_extra_path.
 exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']
 
 # The name of the Pygments (syntax highlighting) style to use.
 pygments_style = None
 
 
 # -- Options for HTML output -------------------------------------------------
 
 # The theme to use for HTML and HTML Help pages.  See the documentation for
 # a list of builtin themes.
 #
 html_theme = 'sphinx_rtd_theme'
 
 html_context = dict(
     display_github=True,      # Integrate GitHub
     github_user='maximilianh',   # Username
     github_repo='cellbrowser',     # Repo name
     github_version='master',  # Version
     conf_py_path='/docs/',    # Path in the checkout to the docs root
 )
 # Theme options are theme-specific and customize the look and feel of a theme
 # further.  For a list of options available for each theme, see the
 # documentation.
 #
 # html_theme_options = {}
 
 # Add any paths that contain custom static files (such as style sheets) here,
 # relative to this directory. They are copied after the builtin static files,
 # so a file named "default.css" will overwrite the builtin "default.css".
 html_static_path = ['_static']
 
 # Custom sidebar templates, must be a dictionary that maps document names
 # to template names.
 #
 # The default sidebars (for documents that don't match any pattern) are
 # defined by theme itself.  Builtin themes are using these templates by
 # default: ``['localtoc.html', 'relations.html', 'sourcelink.html',
 # 'searchbox.html']``.
 #
 # html_sidebars = {}
 
 
 # -- Options for HTMLHelp output ---------------------------------------------
 
 # Output file base name for HTML help builder.
 htmlhelp_basename = 'cellbrowserdoc'
 
 
 # -- Options for LaTeX output ------------------------------------------------
 
 latex_elements = {
     # The paper size ('letterpaper' or 'a4paper').
     #
     # 'papersize': 'letterpaper',
 
     # The font size ('10pt', '11pt' or '12pt').
     #
     # 'pointsize': '10pt',
 
     # Additional stuff for the LaTeX preamble.
     #
     # 'preamble': '',
 
     # Latex figure (float) alignment
     #
     # 'figure_align': 'htbp',
 }
 
 # Grouping the document tree into LaTeX files. List of tuples
 # (source start file, target name, title,
 #  author, documentclass [howto, manual, or own class]).
 latex_documents = [
     (master_doc, 'cellbrowser.tex', 'cellbrowser Documentation',
      'Maximilian Haeussler, Lucas Seninge, Nikolai Markov', 'manual'),
 ]
 
 
 # -- Options for manual page output ------------------------------------------
 
 # One entry per manual page. List of tuples
 # (source start file, name, description, authors, manual section).
 man_pages = [
     (master_doc, 'cellbrowser', 'cellbrowser Documentation',
      [author], 1)
 ]
 
 
 # -- Options for Texinfo output ----------------------------------------------
 
 # Grouping the document tree into Texinfo files. List of tuples
 # (source start file, target name, title, author,
 #  dir menu entry, description, category)
 texinfo_documents = [
     (master_doc, 'cellbrowser', 'cellbrowser Documentation',
      author, 'cellbrowser', 'One line description of project.',
      'Miscellaneous'),
 ]
 
 
 # -- Options for Epub output -------------------------------------------------
 
 # Bibliographic Dublin Core info.
 epub_title = project
 
 # The unique identifier of the text. This can be a ISBN number
 # or the project homepage.
 #
 # epub_identifier = ''
 
 # A unique identification for the text.
 #
 # epub_uid = ''
 
 # A list of files that should not be packed into the epub file.
 epub_exclude_files = ['search.html']
 
 
 # -- Extension configuration -------------------------------------------------