File Changes for mspeir

v1.2.15 to HEAD (2025-05-22 to 2025-11-12) review

• src/cbPyLib/cellbrowser/cellbrowser.py
  • lines changed 1, context: html, text, full: html, text
    d03a89dc413d8f529778e5ad23b3e296dd2e99b2 Tue Jul 29 09:03:31 2025 -0700
    fixing issue with cbScanpy not properly getting inMeta declared in scanpy.conf
• src/cbPyLib/cellbrowser/geneinfo.py
  • lines changed 15, context: html, text, full: html, text
    b7f624b1913a3b14792339272310d378db114886 Fri Jul 11 09:01:49 2025 -0700
    making changes so that cbMarkerAnnotate works on seurat marker files and outputs annotated seurat marker files that work with cbBuild
• src/cbPyLib/cellbrowser/genes.py
  • lines changed 6, context: html, text, full: html, text
    d17cf65947b999bfaf88af1fc6eaaff2c1f1080a Wed Jun 25 10:54:12 2025 -0700
    changing hgdownload urls from cse -> gi
• src/cbPyLib/cellbrowser/hubmaker.py
  • lines changed 4, context: html, text, full: html, text
    175c26e8907957b668222471a3b33ee0a13b602c Fri Jul 18 09:04:53 2025 -0700
    fixing cbHub to output same number of barChartColors as there are clusters
• ucsc/processMarkers
  • lines changed 132, context: html, text, full: html, text
    d409dc301e4bda2d1fa29a795224e0e8b6abf7b0 Thu Sep 25 19:34:34 2025 -0700
    adding script to process markers from CellMarker, PanglaoDb, and singleCellBase, outputs json files for human and mouse marker genes from these files, refs #24611
• ucsc/updateNewsSec
  • lines changed 34, context: html, text, full: html, text
    1468e11700d139e452a7e77f9e30b4f87f9f38ec Fri Jun 13 15:30:58 2025 -0700
    Fixing script so that only one entry per date is added to combined.html,added several options to script to control output directories for the various files which is mostly useful for debugging