v105-final

• Andy is working on the sea urchin browser.
• Andy has loaded microarray data from normal tissue into hgFixed.
• Angie has completed a 4way multiz track for flies (sim-mel-yak-pseudo).
• Brian generated D. mel proteins for D. sim, and is working with reconstructed ancestor data.
• Donna has edits for mm6 and chains/nets.
• Fan has completed proteome browser for mm6.
• Fan has documented the known gene process for mm6 in kent/src/hg/makeDb/trackDb/mouse/mm6/knownGene.html.
• Heather extended the trackDb diff checking scripts to handle hgFindSpec.
• Hiram completed phastCons10 and Map Contigs for mm6.
• Hiram has fixed RT #1177 and #1186.
• Hiram has started a bashVsCsh document.
• Hiram added a utility for checking RepeatMasker output.
• Jim has added 5000+ lines to paraFlow.
• Kate is working on mafTrack enhancements and ENCODE tracks.
• Mark created bedToGenePred.c.
• Rachel is working on zebrafish BAC ends.