v106-preview

• Andy has generated the mm5-->mm6 liftOver chain files.
• Andy also made edits for the restriction enzyme track.
• Angie has generated a Conservation and a SNP track for galGal2. Conservation track is in the push queue. SNP track is waiting for discussion with dbSNP regarding errors. (We have another SNP source for galGal2).
• Brian and Kate continue to work on new MAF data generation (Brian) and display (Kate).
• Jim has an edit to src/lib/blastOut.c.
• Jim also has ~3000 lines for paraFlow.
• Donna and Rachel are working on zebrafish BAC Ends.
• Hiram has started on ce3.
• Hiram is also working on src/hg/makeDb/hgLoadOut/rmskFeatBits.pl.
• Chuck has several edits, including:
  • added a filter to hgTrackUi.c for nonsense-mediated decay on gene pred tracks. Supported by function genePredNmdTarget in src/hg/lib/genePred.c revision 1.67.
  • speed tweaks to wiggle tracks. Also added a color by option that gets pulled out of the cart.
  • new transcriptome track for the phase two data. Required modifications to the composite track architecture to accommodate mixing bed and wiggle tracks.