v107-preview

• Fan continues to document the Known Genes process. He has over 400 new lines in makeHg17.doc.
• Fan has a new utility src/hg/protein/kgGetCds.c, and edits to utilities src/hg/protein/kgPick and kgXref2.
• Mark added a program to repair the extFile table in src/hg/makeDb/genbank/src/repair/refPepRepair.c.
• Mark implemented a new hash function in src/lib/hash.c that is 3-13 times faster than hashCrc.
• Rachel is working in danRer2 on liftOver from danRer1, BAC ends and multiz 6 way alignment. She also recreated the RH Map track for both danRer2 and danRer1 with more stringent BLAT filtering.
• Galt did the initial commit of src/hg/near/hgNetDist/hgNetDist.c, a new gene/protein network distance calculator/loader program for GS.
• Heather added test automation for liftOver in java/src/edu/ucsc/genome/util/LiftOverTest.java and in the build scripts.
• Robert added a new utility src/hg/intronSizes/intronSizes.c.
• Andy added coloring for base level display of the restriction enzyme track in src/hg/hgTracks/cutterTrack.c.