v108-final
- Angie has made 5 edits to hgTracks to support composite tracks.
- Angie has ~350 lines in makeEncodeHg16.
- Angie loaded ESTs for anoGam1.
- Angie added a clean target to trackDb/makefile.
- Brian added src/lib/phylotree.c.
- Brian generated mouse proteins tracks for mm6 and hg17.
- Brian added revision 1.81 to hgTracks/wigMafTrack.c:
visualize mafs by following shortest path through tree to
target species (enabled by "speciesTree" in trackDb settings)
- Brian added revision 1.198 to hgTrackUi.c:
UI to select target species when we're showing the shortest path
through a phylo tree (enabled by "speciesTree" in trackDb
settings)
- Hiram added support for bedGraph format, including the new utility hgLoadWiggle/varStepToBedGraph.pl.
- Hiram has loaded numerous ENCODE tracks.
- Hiram did the initial draft of BAC Ends for mm6.
- Kevin Schneider has extended support for Lowe lab tracks:
about 100 lines in each of hgTracks/expRatioTracks.c, hgTracks/loweLabTracks.c,
hgc/expClick.c and hgc/hgc.c.
- Galt added support for ftp upload of custom tracks (src/lib/net.c).
- Galt is working on adding p2p to Gene Sorter.
- Galt has edits for push queue and build script maintanence.
- Fan has completed a new build of KG/GS/PB for mm6 (~1250 lines in makeMm6.doc).
- Kate added a -release option for hgTrackDb.
- Kate has edits for the ENCODE Gencode track.
- Jim has done document edits for numerous ENCODE tracks.
- Gil added -scoreFile option to lavToPsl.
- Gil added and fixed options to chainFilter.
- Gil added options to axtFilter.
- Rachel has edits for danRer2 BAC Ends and 6 way alignment.
- Rachel has started on danRer3.
- Mark added range filtering to netFilter.
- Mark added defensive logic to psl.c.
- Mark refactored pslStats.
- Mark extended gbGetExtries to handle duplicates.
- Daryl has loaded tracks for Tajima's D to hg16 and hg17.
- Donna has 750 lines in 14 files.
- Chuck has altSplice changes.
- Andy has loaded the Augustus track.
- Heather has loaded 4 variation tracks (3 CNPs and Fosmid Discordants) in hg16.