v110-final

• Hiram is working on hgTables/correlate.c and hg/bedItemOverlapCount.c.
• Robert Baertsch has new files hg/lib/mrnaMisMatch.c and hg/pslCDnaGenomeHatch/pslCDnaGenomeMatch.c The commit comment for the latter reads: "filter out mrnas that align multiple times and pick best hit".
• Mark has a small edit to lib/nib.c that produces a 4.2x speedup reading nibs.
• Jim has a new file src/hg/raSort/raSort.c.
• Jim also divided the ENCODE tracks into groups.
• Heather added trackHandlers for cnpSharp and cnpIafrate. Also hgc edits for cnpSharp.
• Kate cleaned up the trackDb.ra whitespace.
• Kate is working on the MLAGAN tracks.
• Angie has 20 files in human/hg16/*.html.
• Angie has 500+ lines in human/hg16/trackDb.ra, including enhancements for Affy tracks and work with Nathan Trinklein on smoothing data.
• Donna has 13 files in human/hg16/*.html.
• Donna has 50+ lines in human/hg16/trackDb.ra.
• Rachel has ~1000 lines in makeDanRer3.doc.
• Rachel reloaded contigs for danRer2.