v111-final
- Hiram has added a correlation function to hgTables. Currently it supports
bedGraph and wiggle. Testing is on-going. So far all tests match
results from R.
- Angie has added support for a new type of track: bed5FloatScore.
- Bob added a script for validation of the files in /gbdb.
- Fan has a new utility src/hg/hgKnownGeneList/hgKnownGeneList.c that
generates KG lists (30/page) for Google to index.
- Fan committed kent/src/hg/makeDb/trackDb/human/hg17/knownGene.html,
documenting the KG II process.
- Kate is working on the ENCODE EGASP data.
- Donna has ~400 lines in ~50 files.
- Mark added a -wholeChains option to
mouseStuff/netChainSubset/netChainSubset.c.
- Mark added filtering for overlapping a specific region in chainFilter.c
and netFilter.c.
- Mark has 2 edits to src/hg/lib/genePred.c: validation of genePred frame
against exon type, and bug fix setting frame when there are query inserts.
- Mark added support for pslx in pslCDnaFilter.
- Heather has hgc edits for CNP (Sharp) and HapMap SNPs.
- Jim has commits to src/oneShot/motifConvert and polishing of track
descriptions.
- Belinda added all fields from table as a Galaxy output option.
- Adam changed 2000 lines documenting phastCons.