v120-preview
New things:
- Kate has edits to hgTracks for composite tracks
- Chuck has edits to hgTracks to fix problems with affyTxnPhase2 track
(some backed out)
- Galt added new library code: mime.c, quickHeap.c
- Robert Baertsch has edits to gbArchaeGenome and hgc for Archaea genome
- Fan added fuzzy search on Known Genes description to hgFind.c
- Todd Lowe added Perl scripts to automatically create
microbial genome browsers (8000 lines)
- Craig (lowec) - new function twoBitSeqSizeNoNs in twoBit.c
- Mark has a new util mafFetch
- Mark added an interface to get pipeline input from a memory buffer
- Mark added support for files larger than 4GB to faSplit.c
- Mark has edits to genePredToMafFrames to handle genes that
map to multiple locations
- Matej (lexa) - edits to blatz
- Jim added new utils: maxEachRow, minEachRow
- Jim has additions to jksql: sqlQuickNonemptyString, sqlQuickNumList
- Jim made an addition to common.c: differentStringNullOk()
- Heather added perf/hgTracksRandom.c
- Jim added a new feature to textHistogram
Bug fixes:
- Galt has edits to chainMergeSort.c
- Andy Pohl had a fix to gbArchaeGenome.c.
- Robert Baertsch has a bug fix in hg/lib/spDb.c.
- Daryl has edits to the LD track (backed out in v120 final)
- Fan has edits to protein scripts
- Hiram cleaned up sageVisVGI dir
- Mark has edits to mafToPsl
Data:
- Kate had lots of ENCODE trackDb edits.
- Andy Pohl is working on red flour beetle (triCas2)
- Rachel danRer3: added tetNig1 & monDom2 net/chain tracks
- Rachel added danRer3 net/chain tracks to tetNig1 & monDom2,
- Hiram - mm7 additions, stricter filtering for mm6 STS markers
Ongoing:
- Brian continues to work on the ancestor reconstruction
- Jim has edits to VisiGene