v124-preview

New things:

• Hiram has added extensive new font support.
• Jim added a maxGap option to gfServer.
• Mark has a new util build/makeErrFilter.

Edits:

• Jim has enhancements to sqlToXml, autoXml, dtdParse.c, xp.c, xap.c.
• Jim has fixes to support Mac gcc 4.0.1 compiles.
• Angie has edits to doBlastzChainNet.pl as requested by Jen, regarding liftOver chain file naming and placement.
• Angie added searchName knownGeneAcc to the top-level trackDb.ra.

Bug fixes:

• Rachel has a fix for our cross-link to Ensembl (off-by-one error).
• Jim fixed a 64 bit rounding error in joinerCheck.

Data:

• Daryl added makeEncodeOrtho5.doc (800+ lines)
• ENCODE Recombination rate tracks (Daryl)
• hg18 Genscan (Fan)
• hg18 danRer3 blastz (Rachel)
• apiMel repeat mask (Andy)
• strPur1 human proteins (Andy)
• triCas2 proteins (Andy)
• canFam2 multiz, phastCons, self-chains (Angie)
• droYak2 contamination track (Angie)
• ce3 3 way multiz, phastCons, maf downloads (Hiram)
• hg17 MSA (Kate)
• hg15, hg17 cow synteny (Heather)