v128-final

New things:

• Angie added hgTables support for minimal access control.
• Angie added -noSelf option to doHgNearBlastp.pl.
• Fan wrote 5 new utils: hg/protein/KG2.sh, KG3.sh, kgProtMap2.sh, kgBestMrna/kgPrepBestMrna2.c, kgBestRef2/kgPrepBestRef2.c.
• Andy wrote hg/utils/randFrag/randFrag.c.
• Heather wrote new utils for dbSnp processing: snpSNP.c, snpFinalTable.c, snpMultiple.c.
• Angie wrote hgLoadSqlTab.c.
• Kate wrote ratStuff/mafSplit/mafSplit.c.
• Daryl wrote hg/snp/tajD/tajD.c.
• Bob added a script for gene sorter testing.

Edits:

• Jim has extensive edits to paraflow
• Daryl has new format for storing alleles in hapmapSnps
• Mark added synthetic status type for mgc.
• Mark split algorithm portion of pslMap into a library module.
• Andy added a new function in lib/hash.c.
• Bob has edits to checkStoreUnits.csh

Bug fixes:

• Angie has a bug fix to cheapcgi.c.

Data:

• Fan did liftOver to hg18 from hg16 and hg17.
• Fan did hg18 17-way multiz.
• Fan did KG part I for mm8.
• Hiram continues to crank through mm8.
• Angie added canFam1 Ensembl.
• Angie added canFam2 native refSeq, rn4 chains/nets.
• Angie added mm7 rn4 blastz/chain/net.
• Rachel added a radiation hybrid map for danRer3.