v130-preview

New things:

• Jim has extensive paraFlow changes/additions.
• Angie added a new perl module HgAutomate.pm.
• Andy added a new utility bedMergeExpData.
• Heather added a new util snpCompareLoctype.c.
• Galt has a new feature in vgProbeTrack.c.
• Fan has new utils src/hg/makeDb/hgCalStat/hgCalStat.c and src/hg/makeDb/hgCalStat/stats.pl, with credit to Hiram.

Edits:

• Mark added an option to overlapSelect to get aggregate stats.
• Mark removed the extFile update from genbank dbload.
• Jim added slRefEw to common.c.
• Angie has on-going code cleanup to conform to -Wall.
• Andy has edits to gbArchaeGenome.c.
• Daryl has edits to snp/tajD/tajD.c.
• Rachel has an edit to hgGene that added functions to get a gene symbol and refseq id from a cross-ref table.
• Rachel has an edit to hgc that provides details for the ENCODE pseudoGene track.

Data:

• Fan completed mm8 mrnaRefseq, KG search index files, KG gene list pages for Google, microary tables, GS tables.
• Fan completed CPG islands and summary stats for hg18.
• Angie is working on rn4 repeats.
• Kate is working on panTro2 pairwise alignments.
• Andy has UI changes for the Affy human exons track.
• Galt added makeDoc for vgProbeTrack and knownToVisiGene.
• Heather added makeDoc for hg17 build125 SNPs.