v134-final
Andy Pohl
hgTracks -
Fixed a bug preventing item clicks in full-mode unless next-item nav was set.
Added full-mode compatibility to the next-item button.
Turned next-item button off for PS/PDF output.
hash - A new function to make a hash out of a simple named linked list.
Angie
checkHgFindSpec - add 1 to chromStart when printing out position range.
Added support for IGTC Gene Trap track
Regenerated dmBlastTab, hgBlastTab, mmBlastTab
Added -minMatch=0.1 to hgAddLiftOverChain
Robert
pslPseudo improvements
Added maf filter option to keep blocks with a component in filename
Daryl
chimpHiQualDiffs - added options to include chimp position
and to ignore quality scores of 98
Fan
Rebuilt ensGene, simply removed all hap chrom entries
Galt
vgLoadJax - fixed jax expression level processing
Giardine
hgMut - added .as, fixed html page
Rachel
UW/Regulome CAP track - updated and renamed as UW/Regulome
DNase I Array.
Finished zebrafish multiz 7-way and conservation tracks
Moved various liftover files to the right location,
corrected md5sum.txt
Heather
Edits to cnp.html
Hiram
Various changes to make wiggle customTracks work!
Added utility timing functions
Kate
hgCustom - new interface for customTracks
Drop unused indexes in maf summary table - various dbs
Jim
hgBlat - support incoming links specifying only organism
hgGenome - whole-genome viewer
hgTracks - refactoring to share between hgTracks and
hgGenome
Mark
getRna - added option to get mRNA even if no cds
Ancestor transmap improvements