v135-final

Code changes:

• updated next-exon msg text (Andy)
• fixed Table Browser bug in handling GFF files (Angie)
• added support for single quotes in item names (Angie)
• fixed problem w/overlap detection in .maf files w/multiple targets (Angie)
• added $HTTP_COOKIE dump to cartDump (Angie)
• updated hgGene to display exon count (Fan)
• updated RGD QTL display code (Fan)
• mods to hgConvert, hgLiftOver (Galt)
• updates to qaPushQ (Galt)
• mods to VisiGene (Galt)
• added/updated mime, base64 tests (Galt)
• mods to Human Mutation and LandMarks track displays (Belinda)
• added support for Illumnia track (Heather)
• mods to SNP handling code (Heather)
• mods to wiggle track code (Hiram)
• fix to support comments in GFF custom tracks (Hiram)
• added support for chromGraph (Jim)
• added performance improvement in loading gene sets w/large # of scaffolds (Mark)
• added transMap support (Mark)
• fixed bug w/genePredToGtf (Mark)
• fixed bug w/spliced codons (Mark)
• fixes to PSL code (Mark)

Data changes:

• added SEG track to MGC (Adam)
• added/updated IGTC Gene Trap for mm8/mm7 (Angie)
• more work on galGa3 (Angie)
• more work on rn4 (Angie)
• more work on xenTro2 (Angie)
• added several more ancestors to browser (Brian)
• added Hominidae & mapping tracks to panTro2 (Brian)
• added Hominidae chain/net and chimp/human ancestor tracks to hg18 (Brian)
• added rn4 KG-related tables (Fan)
• mods to danRer3 (Rachel)
• more work on danRer4 (Rachel)
• generated mm7->mm6 liftOver chain (Rachel)
• fixed oryCun1 bigZips downloads (Rachel)
• added Illumina track (Heather)
• added regPotential tracks for mouse & human (Hiram)
• added new Uppsala chip/chip track (Kate)
• added transMap tracks (Mark)