v135-preview

Angie
 hgc - Updated the name-parsing for genomicSuperDups
 Reloaded flyBaseNoncoding and flyBase2004Xref

Brian
 wigMafTrack - bugfixes - doesn't remove initial dashes

Fan
 rgdQtl
 Added logic to doHgMut() to process DV entries

Rachel
 danRer4 alignments to mm8, re-did multiz7way and phastCons

Galt
 added pattern to Jax expression for visiGene
 checked in build script improvements
 hgLiftOver and hgConvert default chain choices improved

Heather
 added Hinds deletions track :)
 finished Conrad deletions and loaded McCarroll dels.

Hiram
 Add hgLoadBed and hgLoadWiggle,wigEncode to cgi-bin binaries builds for
the customTrash loaders
 various customTrack improvements
 mm5 and mm6 to mm8 liftovers

Kate
 hgCustom - added support for browser lines

Bob
 compareTrackDbs.csh - added some error checking
 knownGene.csh - improved output, cleanup, added histogram

MarkD
 replace rn3 twinscan with nscan
 fixed bug with linking mafFrames on reverse strand of source genome
 added canFam2 NSCAN gene predictions
 fixed bug deleting intronEst entries
 added option to process multiple organism with one pass through the MAF