v141-final - 28 Aug. 2006

Code changes:

• More work on GB automation (Angie)
• Added test cases to gigAssembler/checkAgpAndFa/ (Angie)
• Fixed bug with display of sample rows on TB "describe table schema" page (Angie)
• Added strand info to hgGene.c (Fan)
• Added several mods to snpLoad (Heather)
• Added support for 3 digits in snpExpandAllele.c (Heather)
• Added mod to snpMaskChrom.c to improve database select performance (Heather)
• Updated/revamped script to generate STS markers for mouse assemblies (Hiram)
• More work on hgCustom (Kate)
• Added error msg in hgConvert to replace err 500 (Jim)
• Added warning to liftOver abt not using it for x-species lifting (Mark)
• Added options for getting candidate CCDSs (Mark)
• Fixed bug in overlapSelect/ with expanding number of rows when reading a bed (Mark)
• Added doVegaGeneZfish function to hgc.c to support zebrafish Vega genes track (Rachel)
• Modified how Ensembl link is constructed in hgc.c (Rachel)
• Added mods to hgc.c to simplify archiving assemblies w/chain & net tracks (Rachel)

Data changes:

• Added hg18 polyA DB track (Andy)
• Added mgcGenes for bosTau2 to genbank.conf, enabled bosTau2 mgc-specific tables (Mark)
• Removed underbar from dbRIP table names (Hiram)
• Added more ENCODE data from Crawford lab to hg17 (encodeNhgriDnaseHsChipRaw) (Kate)
• Added augustusAbinitio & augustusHints tracks for rheMac2 (Mario)
• Fixed bug w/missing source genes in ccdsInfo, reloaded ccds tables (Mark)
• Added danRer4 BAC ends tables, Vega genes (Rachel)
• Updated ChIPOTle Peaks subtrack to UNC FAIRE on hg17, changed Peaks/Signal subtracks to bedGraph (Rachel)
• Removed clone_id field from vegaInfoZfish (Rachel)