v142-final - 11 Sep. 2006

Code changes:

• Ongoing remodelling work on microarray track UI & code (Andy)
• Ongoing work on browser build automation (Angie)
• Exposed LD functions for rnaLpFold track (Daryl)
• Added display for SNPs that align to multiple genomic locations (Daryl)
• Added alignments of SNP flanking sequences to the genomic sequence (Daryl)
• Added links to HPRD data (Fan)
• Added supporting files for oreganno tables (Belinda)
• Added snpGetDeletions and snpCheckCluster2 code (Heather)
• Added filter on weight to snpGetInsertions (Heather)
• Mods to snpMask/seqWithoutDeletions (Heather)
• Restored several lost STS marker source code files (Hiram)
• Fixed polyA trimming to better handle noise, leave 2 As to complete stop codon (Jim)
• Changed "length legend" to "length ruler" in phyloGif UI (Bob)

Data changes:

• Updates to hg18 polyA track(Andy)
• Added galGal3 chainSelf (Angie)
• Added rnaLpFold track (Daryl)
• Added tables to link in HPRD data (Fan)
• Added tables for hiv DB (Fan)
• Changed Human Mutation track to Locus Variants, added strand & label to gvPos, updated data, added gvPos to hg18 (Belinda)
• Generated hg18 SNP-masked sequence for insertions/deletions (Heather)
• Updated run of mm8 STS markers (Hiram)
• Added rn4 NSCAN track (Mark)
• Reload of GenBank - sacCer1 (Mark)
• Added ha_elements to hg17, hg18 (Sol)