v142-preview - 5 Sep. 2006

Code changes:

• fix for bug in pslCDnaGenomeMatch.c that did not pass through alignments with no misMatches (Robert)
• added snpGetInsertions() and snpCheckCluster() to snpLoad (Heather)
• added seqWithInsertions() and seqWithoutDeletions() to snpMask (Heather)
• improvements to STS markers code (Hiram)
• bug fixes to hgCustom (Kate)
• added sort to mafsInRegion/loadRegions() (Kate)
• added new string function stringBetween() to lib/common.c (Kate)
• fixed NSCAN search regexp to match new naming convention (Mark)
• added code to fill in variables on MGC description/Method link to prevent hgc error (Mark)
• added -overlapSimilarityCeil and -overlapThresholdCeil options to overlapSelect/selectTable.c (Mark)
• added mod to ccdsMkTable - don't add bin column when creating files (Mark)
• removed unneeded indel on gbStatus (Mark)

Data changes:

• mm8 STS markers update (Hiram)
• added NSCAN predictions for danRer4, mm8 (Mark)
• translated SNP array data from hg17 -> hg18 (Heather)
• edited hg18 snp126 data to detect certain clustering errors (Heather)