v143-preview - 19 Sep. 2006

Code changes:

• Updated blat/refRnaX.psl to include recent blat improvement w/polyA (Angie)
• Added support for browser sequence logos (Brian)
• Added support for rnaLpFold track (Daryl)
• Added orthologous allele to SNP name when available (Daryl)
• Added alignments of SNP flanking sequences to genomic sequence (Daryl)
• Updated KG color scheme (Fan)
• Changed autoDtd/autoDtd.c to allow values/attributes w/leading zeros to be treated as IDs instead of integers (Galt)
• Removed redundant call from lib/net.c that fails on platforms, confusing blat users (Galt)
• Changed terms used to describe disease/phenotpye association (Belinda)
• More edits to text & links for ORegAnno track, added strand (Belinda)
• Fixed gvPos searches (Belinda)
• Added parser fixes to hg/utils/gvParsers/swissProt/computeSpVars (Belinda)
• More SNP mods to hg.c: fix strand problem, match sequence length to alignment length, increase gap penalty, display addtl locations for snp126, get coords in reverse for negative strand, etc. (Heather)
• Mod to lib/net.c - don't put port on AHost line when it is default 80, remove extra Accept */* (Hiram)
• More work on hgCustom UI (Kate)
• Fixed bugs w/uploaded graphs in hgGenome (Jim)
• Added support for new MGC clone status code (Mark)

Data changes:

• Added rheMac2 cpgIsland track (Robert)
• Added beginnings of felCat1 browser (Brian)
• Finished mm8 STS Markers update (Hiram)
• Added monDom4 NSCAN predictions (Mark)
• Renamed ha_elements table to hars (Sol)