v145-preview - 16 Oct. 2006

Code changes:

• Added microarray custom track capability to several files. (Andy)
• Mods for Affy human exon tracks. (Andy)
• Added missing isTwoBit flag setting when reading in .2bit file in chainToPsl.c. (Angie)
• Changed output for netSyntenic.c memory usage statement, fixed initialization bug. (Angie)
• Automated generation of reciprocal best chains/nets). (Angie)
• Tweaks to browser automation script locations, etc. (Angie)
• Fixed pointer bug in setSnp125ExtendedNameExtra. (Daryl)
• Restructured/updated omimParseRec.c -- changed text file output to offset/length-based. (Fan)
• Cleaned up form, javascript, clear button code in hgBlat.c. (Galt)
• Fixed topbar menu w/no cart situation in lib/web.c. (Galt)
• Mod to near/hgNetDist/hgNetDist.c to support HPRD. (Galt)
• Improved help messages for twoBitToFa. (Galt)
• Minor UI mods for Locus Variants track. (Belinda)
• Added estimateVisibility(). (Heather)
• Replaced current SNP alignment with use of snpSeq with offset and snpExtFile. (Heather)
• Added new click handler for Yale TARs/Transfrags data track. (Rachel)
• Fixed up position printout for BED3 items in hgc.c. (Hiram)
• Added temp fix to remove custom tracks if assembly changes. (Kate)
• Several tweaks to hgCustom.c during QA cycle. (Kate)
• Moved custom track description handling into library. (Kate)
• Fixed segv problem in lib/hdb.c when chromInfo doesn't exist. (Mark)
• Fixed GenBank data processing bug with search for download files. (Mark)
• Added support for new SNP table naming to pslAnal. (Mark)
• Added safe version of strcp/strcat functions to lib/common. (Mark)
• Fixed bug with mafFlipStrand & annotations in lib/maf.c. (Mark)

Data changes:

• Added hg16 AffyHumanExon data. (Andy)
• Added canFam1 genomicSuperDups data. (Angie)
• Added mm8 genomicSuperDups, wssdCoverage data. (Angie)
• Added ancestor/homIni14 Entropy track. (Bernard, Brian)
• Created omimField table. (Fan)
• Initial work on felCat3. (Heather)
• Reprocessed danRer4 BAC ends, created BAC end alias & xref tables. (Rachel)
• Added yaleBertoneTars data. (Rachel)
• Pre-built mm8 ccsdMgcMap table. (Mark)