v146-final - 6 Nov. 2006

Code changes:

• Fixed hgTracks bug: when drawing tickmarks for differing bases, draw them after all exons have been drawn instead of after each exon, so that non-differing exons don't overdraw when zoomed way out. (Angie)
• Mod to hgc to show location of mRNA in browser. (Robert)
• Updated spreadAlignString3rd() to always display AA at center of codon. (Fan)
• Added support for protein WIG MAF to hgTracks. (Fan)
• Added code to JKSQL_PROF (jksql.c) to count/report total number of SQL queries run by cgi and include connect/disconnect time in total time. (Galt)
• Added HPRD support in hg18/17 to GeneSorter. (Galt)
• Added support for internal or ancestral nodes to phyloGif. (Galt)
• Changed implementation of noRound option in hgGnfMicroarray.c, per Mark. (Rachel)
• More work on customTrash. (Hiram)
• More work on hgCustom - UI mods, removed redirects. (Kate)

Data changes:

• Updated search specs for JAX/MGI tracks. (Angie)
• Added danRer4 bacEndAlias, bacCloneAlias, bacCloneXref tables. (Rachel)
• Work on danRer4 Vega Genes, zfish oligos track. (Rachel)
• Added search for yaleBertoneTars track. (Rachel)
• More work on felCat3. (Heather)
• Added new tfbsCons tables to hg17. (Hiram)
• Rebuilt hg18 clonePos table. (Hiram)
• Work on Tumor Sequencing Project data. (Kate)
• Added new ENCODE data from Duke, GIS, Davis. (Kate)
• Added c-Myc Chip-PET data from Singapore; merged existing tracks into a single composite. (Kate)