v147-final - 27 Nov. 2006

Code changes:

• Added peer-review microarray mods suggested by Angie. (Andy)
• Ongoing -Wall cleanup. (Angie)
• Made debug mode comments more obvious in automation code. (Angie)
• Added utility to mouseStuff/chainOverlap/chainOverlap.c to rescore chains w/average overlap per base. (Brian)
• First pass at a utility to render tube trees (currently works w/Newick trees). (Brian)
• Removed "unnormalized" from score filter label in hgTrackUi.c. (Brooke)
• Ongoing work to support GSID. (Fan, Galt)
• Added logic to wigMafTrack.c to allow not lowering first letter of wigMaf item. (Fan)
• Fixed hgNear bug -- curGeneId not initialized when user pressed list-names button on filter page. (Galt)
• Mod to build script to provide version info in source download file name. (Galt)
• Mods to hgc to simplify process for SNP sequences. (Heather)
• Bug fix in hgc to handle axtAffine size limit in printSnpAlignment2. (Heather)
• Bug fix in wiggleUtils for error 500 when intersecting with wiggle track. (Heather)
• New standalone SNP util -- snpLoad/snpCleanSeq.c. (Heather)
• Fix to BED graph filters (hgTables/filterFields.c) to work even if table doesn't have bin column. (Hiram)
• Ongoing work on customTrash DB. (Hiram)
• Mods to lib/wiggleUtils.c and wigDataStream.c. (Hiram)
• Ongoing enhancements/bug fixes on hgCustom. (Kate)

Data changes:

• Added windowmasker run for bosTau3. (Andy)
• Added gasAcu1 GenBank tracks, Ensembl Genes. (Angie)
• Made trackDb mods for codon-coloring display applicability. (Angie)
• Added Neanderthal track to hg18. (Brian)
• Added uniGene_3 for hg18. (Fan)
• Ongoing work on felCat3. (Heather)
• Initial work on oryLat1 browser. (Hiram)
• Removed extra type field for encodeUWRegulomeBase track in trackDb. (Rachel)
• Added new GIS ENCODE subtracks to hg17. (Kate)
• Changed Duke DNase Pval tracks to bed5floatscore by assigning integer score and retaining p-value float score. (Kate)
• Added ESC LongSAGE track. (Mark)