v150-final - 16 Jan. 2007

Code changes:

• hgSession - added message that BLAT results may expire (angie)
• hg18/ncRNA track devlopment (fan)
• Ongoing GSID development (fan, galt)
• New blastp filtering to improve hits to actual orthologs in KG/otherOrgs (Galt)
• hgc mods to improve URLs for linkouts in gv track (belinda)
• New hgc link classes (belinda)
• customFactory.c - added use of /data/tmp or customTrash.tmpdir for db loading (hiram)
• Allow second html file for data updates to tracks to keep alpha mods from overwriting on beta (kate)
• Moved Proteome Browser link up into the UCSC group on mouse KG details page (bob)
• estOrient.c added version support option (mark)
• Removed unneeded trackUi dropdown for ensGeneNonCoding and other mods for that track (rachel)
• Code to handle correct ensembl archive for links (rachel)
• Build scripts - dropped buildTableDescriptions as QA does that (rachel)
• Build scripts - changed 32-bit build machine to titan (rachel)
• hapmap.c :stand-alone utility to process the HapMap SNP frequency data -- hapmap bug fix and fix logic for otherAllele (heather)
• gbParse - added hack to get ORFeome clones that were given "molecule" type of DNA (mark)
• GenBank crontab mods (mark)

Data changes:

• Added some instructions for CGAP SAGE track for hg18 dealing with the tag mappings to the genome. (andy)
• Ongoing migration of references to PubMed style (ann, archana, kayla, brooke)
• databaseAday tool for QA monitoring (ann)
• Ongoing gasAcu1 development (hiram)
• Custonized ensGene URL for linkouts (hiram)
• Ensembl genes for coding and non-coding genes -- danRer4 (rachel)
• New html for encodeSangerChip track, using kate's new alt-html feature (rachel)
• Cat browser: contig search (hiram)
• Reload native RNAs to get gbMiscDiff tables for MGC (mark)