v150-preview - 9 Jan. 2007

Code changes:

• Added command-line utility for finding restriction enzymes. (Andy)
• Fixed a microarray grouping problem. (Andy)
• Added hgCgiData/make to hg/makefile stuff for CGIs. (Andy)
• Better reporting of out-of-range coords in hgTables/hdb/checkTableCoords (Angie)
• Use HG_WARN_ERR when compiling on hgwdev (common.mk) (Angie)
• Tell user about live/expired custom tracks in hgSession (Angie)
• Fixed several -Wall warnings in altSplice/. (Chuck)
• Changed snp125WeightCutoff to 1. (Heather)
• Added mod to handle equivalence case in sortSnp125ExtendedColorCmp reported by Davide Cittaro. (Heather)
• Allow gene sorter search on UniProt accessions (Jim)
• Fixed out-of-order GEPIS link in Known Genes details page (Jim)
• Improved comments in Gene Sorter code (Jim)
• Added cfgModTime() to return last modification time of hg.conf file (Kate)
• Rewrite custom track trash files when hg.conf changes [support for switchover to CT database requested by Hiram] (Kate)
• Added option to output disoriented PSLs in estOrient.c, fixed memory leak. (Mark)
• Added option to check tables in pslCheck.c. (Mark)

Data changes:

• ornAna1 GenBank (will need to redo with final assembly release). (Angie)
• Added SV data from Lars Feuk, backed out cnpSharp & cnpSebat. (Heather)
• Updated felCat3 blastz notes to several build docs. (Heather)
• Work on gasAcu1 & oryLat1: multiz8way, Ensembl genes. (Hiram)
• Configuration change to ENCODE Yale Chip/chip tracks. (Kate)
• Reloaded Affy Zon Wild Type array data in hgFixed using antilogged values of the normalized log values provided. Loaded the data as a track on danRer3 and danRer4. (Rachel)
• Ensembl Genes (v42) track in progress on danRer4. (Rachel)
• Added the ENCODE RNAz track of RNA secondary structures from the University of Vienna to hg17. (Rachel)