v153-preview - 20 Feb. 2007    (Pairings)

Code changes:

• Mods to tableDescritions.pl (angie)
• TightMrna handler added to hgc (robert)
• Increased buffer size to liftOver (robert)
• pslCDnaGenomeMatch - sort alignment by matches to use largest coverage as starting point. and fix -passthru issue resulting from new sort. remove clustering of alignments (robert)
• PSL test cases (robert)
• Utility to find the closest synteny break before and after a list of beds by searching annotated mafs (brian)
• Removed hgText from makefile (fan)
• Added gadPos to generate genomic positions from GAD annotations (fan)
• Visigene update for Allen Brain Atlas (galt)
• BuildCgi32 - added remove for hgSubjData (galt)
• Ongoing hapmap SNP processing - extend filters, custon handling of monomorphic SNPs, adding score, search terms, more (heather)
• Fix trash directory relative addressing (hiram)
• Added Galaxy to Table Browser (jim)
• Switched Galaxy 1 to Galaxy 2 in Table Browser (belinda)
• Locus Variants default color change (belinda)
• New hgcData links (belinda)
• Mods to handling of GO db (kate)
• Ongoing KGIII processing - chagnes to clusterPsl, ggGraph, ggTypes, txEdgeOrtho, geneGraph, genePred, txCdsEvFromRna, txBedToGraph, makeGraph, txOrtho, txPsl, txPslToBed, txWalk, txAddEvidence, danuitl, rangeTree, weedLines (jim)
• Mods to handling of metaData in hgTabnles (bob)
• Removed gfText from QA utils (bob)
• New QA util - getDbSize.csh (bob)
• Added ability to get refseq peptides with gbGetSeqs (mark)
• Added ability to cleanup selectTable memory to allow checking for memory leaks (mark)
• pslCDnaFilter - added option to skip validation of psl (mark)
• CGAP SAGE mods (andy)

Data changes:

• Human Proteins track for Lizard (brian)
• Browser tracks for Lizard (hiram)
• Added fugu foto (hiram)