v161-final - 12 June 2007    (Pairings)

Code changes:

• Bug fixes and improvements to cgapSage track. (Andy)
• Mods in cart and hgTracks to support overriding of session settings by CGI settings. (Angie)
• Fixed hgTracks problem where tracks with "fancy" mapItemNames had broken item links. (Angie)
• Fixed bug in customFactory that caused wibFile and wigFile settings to be cleaned up rather than kept alive by refreshNamedSessionCustomTracks. (Angie)
• Mods to cheapcgi re: duplicate cookies. (Angie)
• Added support for Omicia track. (Belinda)
• Added support for importing tables and custom tracks as chromGraphs, and detection of Illumina300, 550, and 650 markers. (Galt)
• Fixed problems with correlation functions for custom tracks. (Hiram)
• Ongoing work on wikiTrack. (Hiram)
• Mod to htmlPage.c to properly parse single-quoted strings. (Hiram)
• Added support for separate labeling of alternate conservation track on track UI and hgTracks left label. (Kate)
• Mod to have hTableOrSplitExistsDb return false instead of aborting if DB doesn't exist. (Mark)
• Increased menu limit in web.c from 128 to 1024 entries -- needed for microbial genomes. (Todd)

Data changes:

• Preliminary work in migrating hg17 ENCODE tracks to hg18. (Andy, Ting)
• Work on dm3 chains/nets on several insects. (Angie)
• Added Omicia track to hg18. (Belinda)
• Updated spReactomeId and spReactomeEvent tables. (Fan)
• Added new Illumina SNP array tables. (Heather)
• Set up downloads for 28way. (Kate)
• Added first hg18 ENCODE track -- encodeTbaAlign. (Kate)
• Added N-SCAN tracks to oryLat1, gasAcu1. (Mark)
• Added hg17 ENCODE tracks -- Yale-Affy TransMap and TARs for HELA S3 PolyA and Total RNA (Hiram), new subtracks for UVa DNA Replication Origins track, Yale Chip Signal and P-value tracks. Started addition of Yale Chip Sites track. (Rachel)
• Removed non-unique index field from snoRNAs.sql. (Todd)
• Removed indexing from tRNAs table type. (Todd)