v162-final - 26 Jun. 2007 (Pairings)

Code changes:

Modified hgTables/identifiers.c -- don't show previously pasted IDs from another track in the paste form, don't keep redundant self-mappings from alias table. (Angie)
Modified hgFind.c -- added flyBaseGeneSymbolOneLetter as an exception to the rule of skipping searches on single-character strings. (Angie)
Skip <1Mbp sequences by default in hgLoadMafSummary.c because hgTracks uses summary table only for larger sequences. (Angie)
Modified doRepeatMasker.pl -- use liftUp instead of cat so that ID numbers are lifted, don't strip header before lifting. (Angie)
Modified liftRMAlign.pl -- watch out for negative coords in repeat sequence lines. (Angie)
More work on atom tracks. (Brian)
Added text to hgText gateway and main pages to warn users that the CGI is obsolete, point users at hgTables. (Donna)
Ongoing work on GSID. (Fan)
Fix to hgBlat to make output be consistent between viewing and blatsearch with minMatchShown -- fixes symptom where alignments scoring between 16 and 20 were visible in hgTracks and hgc but not in hgBlat itself. (Galt)
More work on wikeTrack. (Hiram)
Fixes to hgTables/correlate.c for wigMaf. (Kate)
Added support for collapsing track groups on configure page and hgTracks. (Kate)
Fixed test for topScorers filter on hgTracks. (Kate)
Added back code in hgTrackUi to filter the top N-scoring items in a BED track when specified in trackDb. (Rachel)
Added support for bed5FloatScoreWithFdr tables to hgc and hgTracks. (Rachel)