v163-preview - 3 Jul. 2007    (Pairings)

Code changes:

• Added option to make/load chromGraph using IDs from another table. (Andy)
• Added support for comma in hgTables/filterFields.c to support queries such as "where field in ('val1','val2')". (Angie)
• Fixed some looping logic in chainDraw in hgTracks/chainTrack.c which sometimes led to double lines instead of single lines. (Angie)
• Fixed off-by-one coord error in printBand in hgc so we don't display the next band when it begins just after the item. (Angie)
• Added verbose-4 message showing filenames that exist in lib/customFactory.c for debugging and for the wrapper script refreshSledgeHammer.pl to show access times. (Angie)
• Enhanced liftOut() in liftUp.c to also lift the ID column of RM output. (Angie)
• Added default settings for SEQ*_LIMIT suggested by Brian to help prevent horrible run-times for scaffold-scaffold runs where no limits are set. (Angie)
• Fixed hash collision leading to spurious warnings in findCookieData in cheapcgi.c. (Angie)
• Added next item buttons, new links, and new attribite for Locus Variants track. (Belinda)
• Updated blastParse.c to accommodate a change in the blast output format that occurred in either 2.2.14 or 2.2.15. (Craig)
• Added hgHeatmap for John Archie. (Heather)
• More work on GSID. (Fan)
• Ongoing work on wikiTrack. (Hiram)
• Fix to STS Markers display problem. (Hiram)
• Fixed all but one usage of column 9 when it may be itemRgb in lib/bed.c . (Hiram)
• Mods to hgTracks config for track group collapse feature. (Kate)
• Addded image size ofr +/- button in hgTracks to speed up browser rendering and allow scaling. (Kate)
• Added .statsOutputBoth option to overlapSelect.c. (Mark)
• More work on top scorer filtering code in hgc. (Rachel)

Data changes:

• More work on dm3. (Angie)
• Updated hgNearData/columnDb.ra to avoid problem if KG has multiple duplicate records in knowToPfam. (Fan)
• Finished some work on bosTau3. (Heather)
• Updated Harvard conservation for TBA. (Kate)
• Incorporated top-scoring filter into trackDb.encode.ra items. (Rachel)