v166-final - 27 Aug. 2007 (Pairings)

Code changes:

Mods to repeat-masking and reciprocal best automation scripts. (Angie)
Ongoing work on HIV database. (Fan)
Ongoing work on DCC submission pipeline interface. (Galt)
Work on browser automation scripts. (Hiram)
Added utility to check a cytoBand.bed file against chrom sizes. (Hiram)
Ongoing work on hgHeatMap. (Jing)
Added support in hgc for idInUrlSql to give finer control of outside links. (Jim)
Added support for SIB data. (Jim)
Modified hgGenome/import to handle missing date in wiggle imports. (Jim)
Mods to txCdsOrtho to improve usage statements, document output better. (Jim)
Fixed overflow bug on loing_max on 32-bit machines in genoLay.c. (Jing)
Fixes and mods for supertrack display/reordering. (Kate)
Fixed bug in blastToPsl in computing match/mismatch counts. (Mark)
Work on Ensembl/Vega load scripts. (Mark)
Added program to find gaps and blocks in fasta file. (Mark)
Added support for Ensembl non-coding genes track. (Rachel)
Added program for danRer5 processing that takes a contigs-to-scaffolds AGP and a contigs-to-chromosomes AGP and outputs a scaffolds-to-chromosomes AGP. (Rachel)