v167-final - 18 Sep. 2007    (Pairings)

Code changes:

• Automation work to makePushQSql.pl: added -noGenbank option to make script tolerate lack of GenBank tables, don't require gbMiscDiff. (Angie)
• Updated autoSql.c (per Jim) to add withNull logic for SaveToDb functions. (Fan)
• Updated hgGene/synonym.c to show noncoding RNA, per Mark. (Fan)
• Ongoing work on ENCODE submission pipeline. (Galt)
• Automation work on nfsNoodge(). (Hiram)
• Created Gene Sorter colTemplate file for making new types of columns. (Jim)
• Added Gene Sorter intronSize, geneCategory, and cdsScore columns. (Jim)
• Added wigAsciiAverageOverBed util. (Jim)
• Added codAbsAffyQuery -- C version of SQL query. (Jim)
• Ongoing work on hgHeatmap. (Jing)
• Allow visibility in hgTracks.c for super-track members using custom track browser lines. (Kate)
• Adjusted height in base/CDS difference overdraw bars when drawing in UTR (hgTracks/cds.c). (Mark)

Data changes:

• Reloaded mm9 acembly data. (Angie)
• More work on danRer5. (Rachel)
• Added consIndelsHg18Mm8CanFam2 track (indel-based conservation). (Rachel)
• Added more mm9 alignment tracks to other browsers. (Hiram)
• Added marmoset, orangutan, danRer5 chains/nets. (Hiram)
• Added hg18 knownToCdsSnp table. (Jim)
• Moved some genome-wide tracks out of ENCODE groups. (Kate, Ting)
• Renamed several whole-genome tables/tracks to include "wg" prefix. (Kate)