v167-preview - 11 Sep. 2007    (Pairings)

Code changes:

• In hgSession, remove cart variable that refers to non-existent custom track. (Angie)
• Fixes to hgTracks.c: append "Group" to anchor name for each track group, fix to doTrackMap to fix mapbox problem. (Angie)
• Added "-withNull" option to autoSql.c to generate .sql, .h, and .c files to support processing of missing value situations. (Fan)
• Skip NR_xxxx as representative mRNA in hgGene/synonym.c. (Fan)
• Added support for ISPY tables. (Fan)
• Ongoing work on ENCODE pipeline. (Galt)
• Ongoing automation work. (Hiram)
• Mods to altGraphX.c to tolerate edges w/no evidence, change altGraphXEnlargeExons so that largest intron and largest exon are same size. (Jim)
• Remove mapsSelf flag from altGraphXTrack.c to fix full-mode label click behavior. (Jim)
• Ongoing work on hgHeatmap. (Jing)
• Fixed track-reordering problems with custom tracks and super-tracks. (Kate)
• Allow free-format for 'origAssembly' setting used to generate the "Data coordinates converted via liftOver from..." msg. (Kate)
• Added support for PSL track-coloring for entries not in GenBank tables. (Mark)
• Exclude haplotype chroms unless explicitly requested in chainNet.c, chainPreNet.c. (Mark)
• Removed color-by-codon dropdown for Ensembl NonCoding genes track. (Rachel)

Data changes:

• Loaded new hg18 & mm9 acembly data. (Angie)
• Fixed strand values for mm8 genomicSuperDups. (Angie)
• Added ISPY tables. (Fan)
• Rebuild hg18 geneBounds track. (Fan)
• Work on mm9 UCSC Genes, comp. genomics tracks. (Hiram)
• Reworked hg18 fishClone track, created gc5Base downloads. (Hiram)
• Initial work on calJac1. (Hiram)
• Initial work on ponAbe1. (Hiram)
• Added hg18, mm8 SIB Transcriptome. (Jim)
• Added UCSD 2007 ChIP-chip data. (Kate)
• More track for strPur2. (Kord via Rachel)