v167-preview - 11 Sep. 2007
(Pairings)
Code changes:
- In hgSession, remove cart variable that refers to non-existent custom
track. (Angie)
- Fixes to hgTracks.c: append "Group" to anchor name for each track group,
fix to doTrackMap to fix mapbox problem. (Angie)
- Added "-withNull" option to autoSql.c to generate .sql, .h, and .c files to
support processing of missing value situations. (Fan)
- Skip NR_xxxx as representative mRNA in hgGene/synonym.c. (Fan)
- Added support for ISPY tables. (Fan)
- Ongoing work on ENCODE pipeline. (Galt)
- Ongoing automation work. (Hiram)
- Mods to altGraphX.c to tolerate edges w/no evidence, change
altGraphXEnlargeExons so that largest intron and largest exon are same size.
(Jim)
- Remove mapsSelf flag from altGraphXTrack.c to fix full-mode label click
behavior. (Jim)
- Ongoing work on hgHeatmap. (Jing)
- Fixed track-reordering problems with custom tracks and super-tracks. (Kate)
- Allow free-format for 'origAssembly' setting used to generate the "Data
coordinates converted via liftOver from..." msg. (Kate)
- Added support for PSL track-coloring for entries not in GenBank tables.
(Mark)
- Exclude haplotype chroms unless explicitly requested in chainNet.c,
chainPreNet.c. (Mark)
- Removed color-by-codon dropdown for Ensembl NonCoding genes track. (Rachel)
Data changes:
- Loaded new hg18 & mm9 acembly data. (Angie)
- Fixed strand values for mm8 genomicSuperDups. (Angie)
- Added ISPY tables. (Fan)
- Rebuild hg18 geneBounds track. (Fan)
- Work on mm9 UCSC Genes, comp. genomics tracks. (Hiram)
- Reworked hg18 fishClone track, created gc5Base downloads. (Hiram)
- Initial work on calJac1. (Hiram)
- Initial work on ponAbe1. (Hiram)
- Added hg18, mm8 SIB Transcriptome. (Jim)
- Added UCSD 2007 ChIP-chip data. (Kate)
- More track for strPur2. (Kord via Rachel)