v168-final - 2 Oct. 2007    (Pairings)

Code changes:

• Added one-shot program for all-exon gene sorter column. (Andy)
• Added program that combines grep, uniq, sort, etc. when working with 3+ files. (Andy)
• Mod to altSplice/genePredToPsl.c: Make strand '+' if it is neither '+' nor '-', so the output is legal PSL. (Angie)
• Mods to hgc and hgTracks for rgdRatQtl. (Angie)
• Automation work: makeDownloads.pl, makeGenomeDb.pl, makePushQSql.pl, doHgNearBlastp.pl, doBlastzChainNet.pl. (Angie, Hiram)
• Fix to lib/htmShell.c to avoid buffer overflow & resulting stack overflow. (Angie)
• Added ability to specify URL for upload file in hgGenome. (Galt)
• Made CGI logging in lib/cheapcgi.c reusable. (Galt)
• Fixed problem with cloneStringZ. (Galt)
• Added additional color markup of alignments on the EvoFold track details pages. (Jakob)
• Ongoing work on hgHeatmap. (Zack, Jing)

Data changes:

• Work on the human WTCCC track. (Andy)
• Updated mm8 MGI tracks. (Angie)
• Added rgdRatQtl. (Angie)
• Changed nested repeats to interrupted repeats. (Angie)
• More work on mm9 pairwise alignments. (Hiram)
• Attempted to align Venter genome data to hg18. (Hiram)
• Added EvoFold track to dm3. (Jakob)
• Added ispy Agilent gene expression track to hg18. (Jing)
• Added dm3 nscanPasa track. (Mark)
• Added ensInfo. (Rachel)