v171-preview - 6 Nov. 2007    (Pairings)

Code changes:

• Changed details for chromGraph clicks in hgTracks. (Andy)
• UI mods to hgSession. (Angie)
• Fixed build problem with hgText. (Angie)
• Mods to hgTracks/variation.c and hgTrackUi.c -- for type ld2 tracks, added an hgTrackUi checkbox to indicate whether to shade gaps by tInt in dense mode. In ldDrawLeftLabels, use (subtrack-specific) tg->shortLabel if available, for more flexibility, instead of parsing table name first. (Angie)
• Mods to hgLoadSqlTab.c to handle stdin data input gracefully. (Angie)
• Added coloring by type to ORegAnno track, changed coloring for Omicia track. (Belinda)
• Ongoing work on gsid and instinct. (Fan, Jing)
• Updated description of proteinID field for knownGene table. (Fan)
• Ongoing work on ENCODE pipeline. (Galt)
• Fixed incorrect use of toupper() macro in lib/quotedP.c. (Mark)

Data changes:

• Added galGal3 Ensembl Genes. (Angie)
• Updated ORegAnno tracks in hg18, sacCer1. (Belinda)
• Updated hg18 divergence track. (Belinda)
• Finished hg18/targetScanS track. (Hiram)
• More work on mm9 30-way phastCons and phastConsElements. (Hiram)
• Work on hg17 Duke Dnase HS track. (Kate)
• Added hg18 ChIP-chip track from Sweden. (Kate)