v172-preview - 27 Nov. 2007    (Pairings)

Code changes:

• Fix for hgGenome problem in which graph persists after assembly change. (Andy)
• Fixed bug with gvPos track disclaimer code in hgTables. (Angie)
• Mods for gvPos track: added disclaimer, added UniProt variants . (Belinda)
• Ongoing work on ENCODE pipeline. (Galt)
• Added several files to makeDb/hgBedsToBedExps. (Jim)
• Added support for new factorSource type tracks, used to display TFBSs as measured in many tissue or cell type sources. (Jim)
• Mods to hgConvert and hgLiftOver. (Rachel)
• Moved chromSeqFileExists() from hgc.c to inc/chromInfo to make it available to other CGIs. (Rachel)
• Changed functions in lib/hgb.c that use the dbDb on the archive server to use a new table, dbDbArch, in hgcentral. (Rachel)
• Added check to qacAddGapIdx.c and qaAgpToQacIdx.c to make sure gap fits. (Rico)

Data changes:

• Yale Pol II Chip (ChIP-Seq) track on hg18. (Andy)
• Added bosTau3 scaffolds track. (Angie)
• Ongoing work on hg18 HapMap LD track. (Angie)
• Separated out UniProt variants from Locus Variants track. (Belinda)
• Ongoing work on ponAbe2 and calJac1 blastz alignments, conservation. (Hiram)
• Experimental generation of rn4 UCSC genes. (Hiram)