v176-final - 19 Feb. 2008    (Pairings)

Code changes:

• Added first draft of program to output protein alignments from maf files. (Brian)
• Bug fix to lib/linefile.c, fix to check for buffer overflow on mafs with short sequences. (Brian)
• Added hgGene/ctd.c to process CTD data. (Fan)
• Ongoing work on liftAcross. (Hiram)
• Ongoing work on hg18 UCSC Genes update. (Jim)
• Ongoing work on ENCODE submission pipeline. (Kate)
• Fix to score filter on custom tracks. (Kate)
• Mods to several makefiles to exclude .svn directories from rsync. (Mark)
• Ongoing work on reverse-complement displays. (Mark)
• Mods to ratStuff/magToAnc/* and various lib and inc files -- switched to new segment list interface from the old anchor interface. (Rico)

Data changes:

• Added orthologous alleles from reference assemblies of chimp and macaque for human SNPs. (Angie)
• Added 3 new LSDBs to gvPos. (Belinda)
• Added CTD data. (Fan)