v180-final - 15 Apr. 2008    (Pairings)

Code changes:

• Added support for PCR queries against servers running on non-genome targets, i.e. collections of sequences that have been aligned to the genome assembly. (Angie)
• Tweaked sqlDateToUnixTime in lib/jksql.c so mktime will attempt to determine if DST is in effect for a given date. (Angie)
• Ongoing work on GSID. (Fan)
• Ongoing work on ENCODE pipeline. (Galt)
• Ongoing work on GB wiki track. (Hiram)
• Initial implementation of improved strategy for CCDS/UCSC Gene associations (txCds/txCdsEvFromBed/txCdsEvFromBed.c). (Jim)
• Fixed logic error etc. in txGraph/txWalk/txWalk.c. (Jim)
• Added utils/automation/RAFile.pm -- methods to access and parse .ra files. (Larry)

Data changes:

• Work on ENCODE Affy EC track.
• Added dm2 BDTNP ChIP-Chip composite track. (Angie)
• Added hg18 PCR target servers for UCSC Genes and Human mRNAs. (Angie)
• Updated HGNC data. (Fan)
• Added bosTau3/bosTau4 liftOver. (Hiram)
• Loaded ce4 Nucleosome tracks from Fire lab. (Hiram)
• Finished ensGene v49 update. (Hiram)
• Work on petMar1 browser. (Hiram)
• Ongoing work on equCab2 browser. (Larry)
• Initial work on cavPor3 browser. (Tim)