v181-preview - 22 Apr. 2008    (Pairings)

Code changes:

• Added scalebar to Base Position track. (Andy)
• Extended hgPCR to non-genomic targets, added hgPcr results track to Genome Browser. (Angie)
• Fixed hgTables bug -- if regionType is encode but DB does not have encodeRegions, force regionType to genome. (Angie)
• Added cart variable hgtaUserRegionsDb so we don't show regions as an option if they were submitted for another database. (Angie)
• Fixed bug with recent fix to compositeTotalHeight in hgTracks.c: maximumTrackHeight() is per-subtrack, not per-composite. (Angie)
• Added length constants instead of hardcoded sizes for file name and file extension in splitPath. Added mod submitted by Mike Pheasant to phyloTree.c -- allow < and > in names, make sure reRooting Nulls the root. (Brian)
• Ongoing work on GSID. (Fan)
• Onging work on UCSC Genes update. (Jim)
• Added support in automation/doBlastzChainNet.pl for syntenic net on scaffold-based targets. (Kate)
• Added javascript to hgTables/filterFields.c to support "check all" and "clear all" without round trips. (Larry)
• Added some mods to Ensembl link in hgTables nav bar that fixes some problems. (Larry)
• Added isUnknownChrom in lib/hgb.c, cgiMakeCheckBoxWithId in lib/cheapcgi.c. (Larry)

Data changes:

• Added Affy human exon distance to Gene Sorter. (Andy)
• Added human proteins track for petMar1, equCab2, braFlo1. (Brian)
• Updated ensGene to v49 on several orgs. (Hiram)
• Added Transcriptome DB track to mm9. (Hiram)
• Ongoing work on petMar1, braFlo1. (Hiram)
• Finished work on ce4 nucleosome track. (Hiram)
• Ongoing work on equCab2. (Larry)
• Added N-SCAN gene predictions for bosTau4. (Mark)
• Ongoing work on cavPor3. (Tim)