v183-final - 27 May 2008    (Pairings)

Code changes:

• Added support for Illumina probes track. (Andy)
• Ongoing code rearrangement to make a library subset for GBrowse plugins -- ifndef'ed GBROWSE code in several modules that is not yet supported for standalong track-drawing library, moved the standalone initialization and drawing code from gbrowseTest harness into its own file, oneTrack. (Angie)
• Removed unnecessary estimateVisibility from hgTracks/variation.c so we don't have to maintain it in parallel with limitVisibility. (Angie)
• Added support to hgTracks/simpleTracks.c for different subtracks having different limited visibilities. (Angie)
• Ongoing work on instinct, GSID. (Fan)
• Ongoing parasol update. (Galt)
• Finishing work on wikiTrack. (Hiram)
• Mod to hgCustom.c to properly encode all printouts of short and longLabel. (Hiram)
• Added support for custom bedGraphs. (Larry)
• Removed javascript from user html in customTrack.c. (Larry)
• Compute frame for gtf if it's not in genePred -- genePredToGtf/genePredToGtf.c. (Mark)
• Added more transMap support in various modules. (Mark)
• Mods to hgTracks/cds.c -- if show codons in PSLs, draw entire sequence narrow if no cds is available, don't get CDS unless is going to actually be used, make codon-coloring code a bit easier to understand. (Mark)
• Removed from hgTracks/simpleTracks.c -- use of guessed read for ESTs that can't be oriented by splice sites. (Mark)
• Added js/hui.js -- javascript to support subtrack configuration by matrix. (Tim)
• Added functions to js/utils.js to support finding and checking cb's by name and showing/hiding trable rose containing other objects. (Tim)
• Added javascript option for checkbox and dropdown to lib/cheapcgi.c. (Tim)
• Added memSwapChar to lib/common.c. (Tim)

Data changes:

• Added Illumina probes track. (Andy)
• Added caeRem3. (Hiram)
• Added transMap tracks to several assemblies. (Mark)
• Reran genbank on cavPor3. (Tim)