v183-preview - 20 May 2008    (Pairings)

Code changes:

• Mods to several hgTracks modules -- moved track method code (except for dynamic tracks) to the new simpleTracks.c to support sharing code with GBrowse plugins. (Angie)
• Added textBox to lib/psGfx.c, lib/common.ps, lib/common.pss. (Brian)
• Fixed up routine in ratStuff/mafToProtein/mafToProtein.c that outputs untranslated exons. (Brian)
• Ongoing work on GSID and instinct. (Fan, Zack)
• Ongoing work on parasol update. (Galt)
• Incorporated some code review mods into lib/customFactory.c, visiGene/hgVisiGene/hgVisiGene.c, lib/net.c. (Galt)
• Ongoing work on wikiTrack. (Hiram)
• Fixed problem in utils/findMotif/findMotif.c -- was making an error marking the ended of chromosomes as gaps. (Hiram)
• Mods to hgTracks.c to fix up display of vega gense when there is no info table, and properly fiter bed8, bed9, and bed12 custom tracks. (Hiram)
• Now encoding user input in lib/hgFind.c to fix XSS attack hole reported on mailing list. (Larry)
• Added support for RSS feed of versions-list html files. (Larry)
• Moved utils.js code to hs/hgTracks.js. (Larry)
• Added support for transMap tracks to many modules. (Mark)
• Added identity and aligned functions to lib/psl.c and pslCDnaFilter/cDnaAligns.c. (Mark)
• Fixed invalid call to slRevers in lib/dnaLoad.c. (Mark)
• Added -uniz flat to utils/faFilter/faFilter.c to drop dups. (Mark)

Data changes:

• Added Agilent CGH probe track to hg18. (Andy)
• Regenerated multiz15way/up*.maf.gz downloads files per mailing list bug report. (Angie)
• Work on caePb2 assembly. (Hiram)
• Added latest vega genes to mm9 hg18. (Hiram)
• Ongoing work on cavPor3 multiple alignments. (Tim)