v184-final - 10 June 2008    (Pairings)

Code changes:

• Modified featureBits.c -- when including strand in BED output, include a stub score so we print legal BED6. (Angie)
• Added ability to output position strings from native species as well as reference species. (Brian)
• Ongoing GSID work. (Fan)
• Ongoing Parasol work. (Galt)
• Fine-tuning work on UCSC Genes support. (Jim)
• Ongoing work on instinct. (Jing, Zack)
• Added robustness to doEncodeValidate.pl. (Larry)
• Added support for dynamic open/close of track groups without roundtrip to hgTracks. (Larry)
• Added ajax utility code - js/ajax.js. (Larry)
• Added option to getRnaPred/getRnaPred.c to use 2bit file directly instead of going through chromInfo. (Mark)
• Fixed bug in lib/hgConfig.c that prevented CGIs from working under debugger. (Mark)

Data changes:

• Added Discordant Clone Ends from Eichler lab to hg17. (Angie)
• Added multizPrimate track to hg18. (Brian)
• Work on ce6, CaeJap1, CaeRem3, CaePb2 assemblies. (Hiram)
• Initial submission of Stanford NRSF chip-seq and DukeDNase ENCODE data via DCC pipeline. (Kate)
• Ongoing work on new UCSC Genes. (Jim)
• Ongoing work on cavPor3 comparative alignments. (Tim)