v188-final - 5 August 2008    (Pairings)

Code changes:

• Added encodePeak track type, rearranged several ENCODE modules. (Andy)
• Removed active DB check that depends on hgcentral from lib/hgb.c, moved to lib/hgSeq.c. (Brian)
• Added support for snpArrayIllumina1M track. (Fan)
• Added protein/spToSpXref2/spToSpXref2.c. (Fan)
• Mods in makeDb/hgTrackDb/hgTrackDb.c for super track handling. (Kate)
• Mods to ENCODE loader and validator. (Larry)
• Added lib/genomeRangeTree.c -- library routine for genomeRangeTree including enhancements, fixes, and test program. (Mike)
• Ongoing work on instinct. (Zack, Steve)
• Added javascript for matrix initialization, maximum display mode drop down for matrix composites, replaced wigUi and scoreUi with lib routines wigCfgUi and scoreCfgUi. (Tim)

Data changes:

• Added table of orthologous alleles (liftOvered human SNPs) in chimp, orangutan, and macaque. (Angie)
• Ongoing work on 2X pairwise alignments. (Brian)
• Added hg18 snpArrayIllumina1M track. (Fan)
• Added spXref2 table. (Fan)
• Ongoing work on nemVec1. (Kord)
• Added Wold tracks to mm9. (Mike, Tim)