v188-preview - 29 July 2008    (Pairings)

Code changes:

• Mods to hgSession.c -- added help page link, mods to ensure jsInit is always called after cartWebStart. (Angie)
• Mods to ORegAnno filters. (Belinda)
• Ongoing work on instinct. (Zack)
• Added program for displaying ENCODE controlled vocabulary, added new controlled vocabulary types plus the cgi ra file viewer. (Kate, Mike)
• Fixed problem with scaffold-based syntenic net routine in browser automation script. (Kate)
• Restored pfamDesc fields to older names that are used by Gene Sorter, hgGene, and existing proteome databases on RR, reverted protein/lib/domains.c to older column names for pfamDesc table. (Jim)
• Mods to ENCODE loader & validator, moved utility code for ENCODE scripts into automation/Encode.pm. (Larry)
• Added automation/SafePipe.pm module to get status codes from all commands in a pipe. (Larry)

Data changes:

• Ongoing work on 2X pairwise alignments. (Brian)
• Initial work on snpArrayIllumina1M. (Fan)
• Updated hg18 UniGene track. (Fan)
• Ongoing work on nemVec1. (Kord)