v190-preview - 26 Aug 2008    (Pairings)

Code changes:

• Work on ENCODE peak track types. (Andy)
• Added more functionality to some of the options in hgLoadBed.c. (Andy)
• Added MAF as custom track type in hgCustom.c. (Brian)
• Added utility mafGene.c to output a fasta alignment given a maf table and a gene pred. (Brian)
• Added genFedTableDef.c to generate MySQL table definitions for federated tables from regular tables. (Fan)
• Added support for bedgraph views to multi-view composites. (Kate)
• Finishing up work on new UCSC Genes. (Jim)
• Ongoing work on ENCODE loader, validator, and controlled vocab. (Larry, Tim)
• Ongoing work on remote DB functionality. (Mark)
• Work on baseMask functionality. (Mike)
• Refactored genomeRangeTree code, added intersection option. (Mike)
• Fixed problem with wiggles in dense mode not recognizing limitedVis. (Tim)
• Ongoing work on instinct. (Zack, Steve, Jing)

Data changes:

• Finished taeGut1. (Brian)
• Work on oryLat2. (Hiram)
• Added conserved elements and downloads to hg18 ENCODE TBA track. (Kate)
• Deleted extra copy of scaffold_34 (on chr27) from equCab2. (Larry)