v191-final - 16 Sep 2008
(Pairings)
Code changes:
- In hgSeqBed (lib/hgSeq.c), when handling bed 8, if thickStart ==
thickEnd == 0 then set them to chromStart so the address arithmetic isn't
broken. (Angie)
- Ongoing work on hgPal, integration into hgTables. (Brian)
- Added 4th parameter to hgGene/linkc.s URL. (Brian)
- Ongoing work on GSID. (Fan)
- Fixed Parasol bug, improved free/busy cpu counts. (Galt)
- Added support for agilent cgh 244a to Genome Graphs, changed upload form
to allow pasted text. (Galt)
- Added test for psOutput, fixed missing freez in hgTracks.c. (Galt)
- Fixed cookie issue with wikiTrack.c. (Hiram)
- Added safer string check on hgGene/synonym.c cart variable to enable running
without a cart. (Hiram)
- Ongoing work on ENCODE validator and loader. (Larry, Mike)
- Fixed bug with spliced stop codons in genePredToGtf. (Mark)
- Added ideogram files to ps/pdf output in hgTracks.c. (Mark)
- Fixed tranMap bug with stray conn free. (Mark)
- Ongoing work on rangeTree. (Mike)
- Added blending of pixel colors when zooming out in hgTracks. (Robert)
- Added support for individual subtrack configuration in composite. (Tim)
- Added trackDbSettingOn for boolean settings in trackDbCustom.c. (Tim)
- Ongoing work on instinct. (Zack)
Data changes:
- Split Expression and Regulation group into 2 groups. (Kate)