v192-final - 30 Sep 2008
(Pairings)
Code changes:
- Expanded remapRange and bedOverSmall in lib/liftOver.c to map bed8's
thickStart and thickEnd fields. (Angie)
- In lib/hgSeq.c addFeature, don't reject 0-length features; they might be
insertion SNPs. (Angie)
- Ongoing work on hgPal. (Brian)
- Added routine to hdb.c to check for tables of a certain type. (Brian)
- Added option to suppress blank lines to ratStuff/mafGene/mafGene.c,
removed some crufty code. (Brian)
- Added check for bad MAF to lib/mafGene.c. (Brian)
- Modified hgc/mafClick.c to suppress D links unless database exists. (Kate)
- Ongoing work on ENCODE loader and validator. (Larry, Tim)
- Ongoing work on instinct. (Steve, Zack)
- Fixed hgTracks/wigMafTrack.c bug -- wigMAF in dense mode had wrong
height. (Tim)
- Mods to lib/hui.c -- moved restricted link to header, added download
link; adjusted formatting and sqashed one DOM error. (Tim)
Data changes:
- Updated mm9 MGI tracks. (Angie)
- Added flyBase and wormBase hgPal alignments. (Brian)