v193-final - 14 Oct 2008    (Pairings)

Code changes:

• Added next item capability for custom tracks, microarray custom track schema page. (Andy)
• Fixed bug in hgTables/filterFields.c -- "doesn't match" using multiple terms didn't work because the "not" was misplaced. (Angie)
• Implemented red/blue on white option for expression tracks. (Hiram)
• Raised the 1-million window size limit to 100-million to do histograms on wiggle data. (Hiram)
• Added utility to hard mask a soft-masked file. (Jim)
• Ongong work on ENCODE loader and validator. (Larry, Mike)
• Added support for narrowPeak, broadPeak, and gappedPeak to hgTables/correlate.c. (Larry)
• To avoid extFile table clashes at mirror sites, support MAF tables with a single MAF file in track settings. Added MAF r lines to indicate how MAF regions were defined. (Mark)
• Added support for GenBank updates of upstream FASTA and MAF files. (Mark)
• Added support for 4th dimension Z to js/hui.js and lib/hui.c. (Tim)
• Added cloneFirstWordByDelimiter and a couple other simple routines to lib/common.c. (Tim)
• Cleaned up memory allocations in lib/wiggleCart.c. (Tim)
• Ongoing work on instinct. (Zack, Steve)

Data changes:

• Added mm9 Oreganno update. (Belinda)
• Finishing up hgPal downloads and doc. (Brian)
• Ongoing work on 2x assemblies. (Brian)
• Fixed problem with GNF MOE430v2 Atlas V3 data. (Hiram)
• Added Zhao lab nucleosome test data set for hg18 chr1. (Hiram)
• Added ENCODE Sanger Gencode track. (Mike)