v197-preview - 10 Dec 2008 (Pairings)

Code changes:

Added support for filters for ENCODE peak tracks. (Andy)
Bug fix for previous-item buttons, made next-exon button configuration the default setting. (Andy)
Work on cpgIslands automation script. (Andy)
Eliminated all fields and selected fields output types in hgTables when an intersection or subtrack merge is specified. (Angie)
Added tweaks to scoreGrayLevelCfgUi, scoreCfgUi and the bed clause of specificUi in hgTrackUi to support track_minGrayLevel settings for composite tracks and ENCODE peak tracks. Added adjustBedScoreGrayLevel for use with the new track_minGrayLevel tdb setting, apply to bed tracks and ENCODE peak tracks. (Angie)
In hgTracks/doTrackMap, if we skip making mapboxes for a non-full subtrack of a full composite track, add subtrack's height to y. (Angie)
Mods to snp125 displays. (Angie)
Bugfix to hgc.c: when forming a position URL in printPcrSequence, extract accession from glommed target sequence name if necessary. (Angie)
Changed pal.c to use POST instead of GET. (Brian)
Ongoing work on instinct. (Chris, Zack)
Added support for omimGene. (Fan)
Fixed minSore in gfBlatLib.c. (Galt)
Changed MAXALIGN to 50 in mouseStuff/mafCoverage/mafCoverage.c, fixed bug in counting, avoid trying to process the "e" lines. (Hiram)
Work on ENCODE loader and validator. (Larry, Mike, Tim)
Fixed bugs in js/hui.js. (Tim)
Changed lib/wiggleCart.c defaultViewLimits for composites needs to handle double, not unsigned int. (Tim)