v198-final - 13 Jan 2009
(Pairings)
Code changes:
- Fixed itemRgbHeader and itemRgbDataOut to print to the alternate file
handle if present, like the rest of doTabOutDb(File) output. Merged the
nearly-identical doTabOutDb and doTabOutDbFile so there's only one function to
maintain. (Angie)
- Added speed-up of pasted/uploaded identifier processing in hgTables when
#IDs is at most 10000. (Angie)
- Added a complex query to hgTracks/simpleTracks.c to get the gene symbol of
the exact known gene that matches not only the ID but also the genomic position.
(Fan)
- Added custom Gene Sorter markers column from Genome Graphs. (Galt)
- Added files to mediawiki source to turn on UCSC login system. (Hiram)
- Work on b+ tree code for data warehousing. (Jim)
- Added another submit button to long composite pages in hgTrackUi.c. (Kate)
- Added refinements to drag-select on hgTracks image. (Larry)
- Changed location of expand/collapse group buttons. (Larry)
- Added NCBI tasId as a required parameter in makeGenomDb.pl. (Mark)
- Added a function similar to hdb.c/hGetBedRange() that returns only the
count of matching rows. (Mike)
- Added mods to settingByView parameter. (Tim)
- Expanded utils.js/inputArrayThatMatches() to handle selects as well. Also
setCheckBoxesThatContain() should look for beg/end. (Tim)
- Mods to ENCODE validator. (Tim)
Data changes:
- Added more Personal Genomes. (Belinda)
- Ongoing wok on hg18 44-way phastCons, phyloP. (Hiram, Kate)
- Added FOX2 CLIP-seq track. (Hiram)